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Sturgeons are sensitive to environmental pressures and therefore valuable indicators for healthy rivers. This is why the ICPDR has endorsed sturgeons as flagship species. There are six species of sturgeons native in the Danube River Basin, but the survival of these ancient fish is threatened by a range of issues. Through the "Danube Sturgeon Task Force", the ICPDR contributes to actions such as the protection of habitats, the development of migration aids, the breeding of healthy stocks in sheltered facilities, or the struggle against illegal fishing and caviar trade.

The key purpose of Joint Danube Surveys (JDS) is to produce reliable and comparable information on carefully selected elements of water quality for the length of the Danube River, including its major tributaries. Three Joint Danube Surveys have previously been conducted, in 2001, 2007, 2013, and 2019. The 5th Joint Danube Survey is due to launch on 1st July 2025.