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Located in the Carpathian Mountains, the Slovak Republic shares borders with Austria, the Czech Republic, Hungary, Poland and Ukraine. Water management in Slovakia is determined by its geographic position on the watershed divide between the Black and Baltic Seas. The Danube and its tributaries drain 96% of the country into the Black Sea.

The Czech Republic is situated at the roof of Europe and its waters are drained through rivers into three different seas. The majority of the territory is drained by the Elbe and Oder to the North and Baltic Seas. The Morava River drains almost 28 % of the country to the Danube. Nearly 2.8 million inhabitants – around 3.46 % of the population in the Danube River Basin – live in this area.

The Danube River is seeing an influx of new non-native species, stemming from the increasing interconnections with various European and global water bodies via canals and other waterways designed to facilitate navigation. It is currently believed that alien species are very likely to become even more significant in the future, as the importance of the Danube as an international waterway increases.