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Located in the Carpathian Mountains, the Slovak Republic shares borders with Austria, the Czech Republic, Hungary, Poland and Ukraine. Water management in Slovakia is determined by its geographic position on the watershed divide between the Black and Baltic Seas. The Danube and its tributaries drain 96% of the country into the Black Sea.

The Danube River Basin is Europe's second largest river basin, with a total area of 801,463 km². It is the world's most international river basin, flowing through the territory of 19 countries. The ecosystems of the Danube River Basin are highly valuable in environmental, economic, historical and social terms, but they are subject to increasing pressure and serious threats of pollution from agriculture, industry and cities.